ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-125
source: miRBase, original name: cfa-mir-125b-1 (MI0008103)
SEQUENCE & STRUCTURE| miRNA TCCCTGAGACCCTAACTTGTGA miRNA* ACGGGTTAGGCTCTTGGGAGC mismatches: 6 bulges: 0 |
pre-miRNA
TCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGC
dot-bracket secondary structure
..((..(((.(((((((((((..(((((.....))))).))))))))))).)))..))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
TCCCTGAGACCCTAACTTGTGATGTTTACCGTTTAAATCCACGGGTTAGGCTCTTGGGAGC
dot-bracket secondary structure
..((..(((.(((((((((((..(((((.....))))).))))))))))).)))..))...
SIMILARITIES| miRBase eca-mir-125b: 5e-29 PMRD no hits microPC no hits | UniProt no hits RFAM lin-4: 2e-25 |
Identical with: sla-mir-125b from miRBase (MNEST027615) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
