ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-130
source: miRBase, original name: cfa-mir-130a (MI0008029)
SEQUENCE & STRUCTURE| miRNA CAGTGCAATGTTAAAAGGGCAT miRNA* GCTCTTTTCACATTGTGCTACT mismatches: 6 bulges: 0 |
pre-miRNA
GCTCTTTTCACATTGTGCTACTGTCTGCACCTACCACTAGCAGTGCAATGTTAAAAGGGCAT
dot-bracket secondary structure
((((((((.((((((..((.(((..((.......)).))).))..)))))).))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
GCTCTTTTCACATTGTGCTACTGTCTGCACCTACCACTAGCAGTGCAATGTTAAAAGGGCAT
dot-bracket secondary structure
((((((((.((((((..((.(((..((.......)).))).))..)))))).))))))))..
SIMILARITIES| miRBase eca-mir-130a: 1e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-130: 1e-23 |
Identical with: eca-mir-130a from miRBase (MNEST027022) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
