ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-135
source: miRBase, original name: cfa-mir-135a-2 (MI0008025)
SEQUENCE & STRUCTURE| miRNA TGTAGGGATGGAAGCCATGAAA miRNA* TTATGGCTTTTTATTCCTATGTG mismatches: 2 bulges: 1 |
pre-miRNA
TTATGGCTTTTTATTCCTATGTGATAGTAATAAAGTCTCATGTAGGGATGGAAGCCATGAAA
dot-bracket secondary structure
(((((((((((.((((((((((((.(.(.....).).)))))))))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
TTATGGCTTTTTATTCCTATGTGATAGTAATAAAGTCTCATGTAGGGATGGAAGCCATGAAA
dot-bracket secondary structure
(((((((((((.((((((((((((.(.(.....).).)))))))))))))))))))))))..
SIMILARITIES| miRBase gga-mir-135a-2: 1e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-135: 3e-28 |
Identical with: oan-mir-135a from miRBase (MNEST031491) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
