ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-138
source: miRBase, original name: cfa-mir-138a (MI0008056)
SEQUENCE & STRUCTURE| miRNA AGCTGGTGTTGTGAATCAGGCCG miRNA* GCTACTTCACAACACCAGGGTC mismatches: 4 bulges: 1 |
pre-miRNA
AGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGTC
dot-bracket secondary structure
..(((((((((((((...(((((((..(.....)..)))))))..)))))))))))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AGCTGGTGTTGTGAATCAGGCCGTTGCCAATCAGAGAACGGCTACTTCACAACACCAGGGTC
dot-bracket secondary structure
..(((((((((((((...(((((((..(.....)..)))))))..)))))))))))))....
SIMILARITIES| miRBase rno-mir-138-1: 1e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-138: 4e-27 |
Identical with: rno-mir-138-1 from miRBase (MNEST032741) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
