ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-140
source: miRBase, original name: cfa-mir-140 (MI0008100)
SEQUENCE & STRUCTURE| miRNA ACCACAGGGTAGAACCACGGA miRNA* AGTGGTTTTACCCTATGGTAG mismatches: 4 bulges: 0 |
pre-miRNA
CAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGA
dot-bracket secondary structure
..(((((((((((((.(((((((..(((......)))))))))).)))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
CAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGA
dot-bracket secondary structure
..(((((((((((((.(((((((..(((......)))))))))).)))))))))))))...
SIMILARITIES| miRBase gga-mir-140: 5e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-140: 1e-27 |
Identical with: oan-mir-140 from miRBase (MNEST031498) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
