ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-142
source: miRBase, original name: cfa-mir-142 (MI0008160)
SEQUENCE & STRUCTURE| miRNA CCCATAAAGTAGAAAGCACTA miRNA* GTGTTTCCTACTTTATGGATG mismatches: 2 bulges: 0 |
pre-miRNA
CCCATAAAGTAGAAAGCACTACTAACAGCACTGGAGGGTGTAGTGTTTCCTACTTTATGGATG
dot-bracket secondary structure
.(((((((((((.(((((((((...(..(....)..)..))))))))).)))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
CCCATAAAGTAGAAAGCACTACTAACAGCACTGGAGGGTGTAGTGTTTCCTACTTTATGGATG
dot-bracket secondary structure
.(((((((((((.(((((((((...(..(....)..)..))))))))).)))))))))))...
SIMILARITIES| miRBase eca-mir-142: 4e-30 PMRD no hits microPC no hits | UniProt no hits RFAM mir-142: 6e-29 |
Identical with: rno-mir-142 from miRBase (MNEST032747) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
