ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-143
source: miRBase, original name: cfa-mir-143 (MI0008092)
SEQUENCE & STRUCTURE| miRNA TGAGATGAAGCACTGTAGCTC miRNA* GGTGCAGTGCTGCATCTCTGG mismatches: 5 bulges: 0 |
pre-miRNA
GGTGCAGTGCTGCATCTCTGGTCAGTTGGGAGTCTGAGATGAAGCACTGTAGCTC
dot-bracket secondary structure
(.(((((((((.((((((.((((......)).)).)))))).))))))))).)..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
GGTGCAGTGCTGCATCTCTGGTCAGTTGGGAGTCTGAGATGAAGCACTGTAGCTC
dot-bracket secondary structure
(.(((((((((.((((((.((((......)).)).)))))).))))))))).)..
SIMILARITIES| miRBase eca-mir-143: 2e-25 PMRD no hits microPC no hits | UniProt no hits RFAM mir-143: 3e-24 |
Identical with: rno-mir-143 from miRBase (MNEST032749) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
