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ABOUT THIS RECORD

ID: MNEST026717
species: Canis familiaris
miRNA family: mir-143
source: miRBase, original name: cfa-mir-143 (MI0008092)







SEQUENCE & STRUCTURE
miRNA
TGAGATGAAGCACTGTAGCTC

miRNA*
GGTGCAGTGCTGCATCTCTGG

mismatches: 5
bulges: 0

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pre-miRNA
GGTGCAGTGCTGCATCTCTGGTCAGTTGGGAGTCTGAGATGAAGCACTGTAGCTC

dot-bracket secondary structure
(.(((((((((.((((((.((((......)).)).)))))).))))))))).)..


SIMILARITIES
miRBase eca-mir-143: 2e-25

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-143: 3e-24

Identical with: rno-mir-143 from miRBase (MNEST032749)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"




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