ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-148
source: miRBase, original name: cfa-mir-148a (MI0008018)
SEQUENCE & STRUCTURE| miRNA TCAGTGCACTACAGAACTTTGT miRNA* AAAGTTCTGAGACACTCCGACT mismatches: 3 bulges: 4 |
pre-miRNA
AAAGTTCTGAGACACTCCGACTCTGAATATGATAGAAGTCAGTGCACTACAGAACTTTGT
dot-bracket secondary structure
(((((((((((.((((..(((((((.......))).))))))))..)).)))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AAAGTTCTGAGACACTCCGACTCTGAATATGATAGAAGTCAGTGCACTACAGAACTTTGT
dot-bracket secondary structure
(((((((((((.((((..(((((((.......))).))))))))..)).)))))))))..
SIMILARITIES| miRBase eca-mir-148a: 2e-28 PMRD no hits microPC no hits | UniProt no hits RFAM mir-148: 9e-25 |
Identical with: ssc-mir-148a from miRBase (MNEST033998) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
