ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-148
source: miRBase, original name: cfa-mir-148b (MI0008069)
SEQUENCE & STRUCTURE| miRNA TCAGTGCATCACAGAACTTTGT miRNA* GAAGTTCTGTTATACACTCAGGCT mismatches: 4 bulges: 2 |
pre-miRNA
GAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGT
dot-bracket secondary structure
((((((((((.((.((((..((((....(.....)..)))))))).)).))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
GAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGT
dot-bracket secondary structure
((((((((((.((.((((..((((....(.....)..)))))))).)).))))))))))..
SIMILARITIES| miRBase eca-mir-148b: 5e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-148: 2e-25 |
Identical with: ssc-mir-148b from miRBase (MNEST033999) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
