ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-148
source: miRBase, original name: cfa-mir-152 (MI0008162)
SEQUENCE & STRUCTURE| miRNA TCAGTGCATGACAGAACTTGG miRNA* AGGTTCTGTGATACACTCCGACT mismatches: 4 bulges: 2 |
pre-miRNA
AGGTTCTGTGATACACTCCGACTCGGGCTCTGGAGCAGTCAGTGCATGACAGAACTTGG
dot-bracket secondary structure
(((((((((.((.((((..((((...(((....))))))))))).)).)))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AGGTTCTGTGATACACTCCGACTCGGGCTCTGGAGCAGTCAGTGCATGACAGAACTTGG
dot-bracket secondary structure
(((((((((.((.((((..((((...(((....))))))))))).)).)))))))))..
SIMILARITIES| miRBase mml-mir-152: 8e-28 PMRD no hits microPC no hits | UniProt no hits RFAM mir-148: 4e-24 |
Identical with: mml-mir-152 from miRBase (MNEST027762) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
