ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-181
source: miRBase, original name: cfa-mir-181c (MI0008034)
SEQUENCE & STRUCTURE| miRNA AACATTCAACCTGTCGGTGAGTT miRNA* CCATCGACCGTTGAGTGGACC mismatches: 3 bulges: 2 |
pre-miRNA
AACATTCAACCTGTCGGTGAGTTTGGGCAGCTCAGGCAAACCATCGACCGTTGAGTGGACC
dot-bracket secondary structure
..((((((((..(((((((.(((((...........)))))))))))).))))))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AACATTCAACCTGTCGGTGAGTTTGGGCAGCTCAGGCAAACCATCGACCGTTGAGTGGACC
dot-bracket secondary structure
..((((((((..(((((((.(((((...........)))))))))))).))))))))....
SIMILARITIES| miRBase mml-mir-181c: 5e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-181: 2e-25 |
Identical with: ptr-mir-181c from miRBase (MNEST030255) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
