ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-199
source: miRBase, original name: cfa-mir-199-3 (MI0008151)
SEQUENCE & STRUCTURE| miRNA ACAGTAGTCTGCACATTGGTT miRNA* CCAGTGTTTAGACTATCTGTTC mismatches: 3 bulges: 1 |
pre-miRNA
CCAGTGTTTAGACTATCTGTTCAGGACTCCCAAATTGTACAGTAGTCTGCACATTGGTT
dot-bracket secondary structure
(((((((.(((((((.((((.((((....))....)).))))))))))).)))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
CCAGTGTTTAGACTATCTGTTCAGGACTCCCAAATTGTACAGTAGTCTGCACATTGGTT
dot-bracket secondary structure
(((((((.(((((((.((((.((((....))....)).))))))))))).)))))))..
SIMILARITIES| miRBase eca-mir-199b: 8e-28 PMRD no hits microPC no hits | UniProt no hits RFAM mir-199: 1e-26 |
Identical with: ptr-mir-199b from miRBase (MNEST030278) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
