ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-216
source: miRBase, original name: cfa-mir-216b (MI0007987)
SEQUENCE & STRUCTURE| miRNA AAATCTCTGCAGGCAAATGTGA miRNA* ACACACTTACCCGTAGAGATTCTG mismatches: 6 bulges: 2 |
pre-miRNA
AAATCTCTGCAGGCAAATGTGATGTCACTAAAGAAATCACACACTTACCCGTAGAGATTCTG
dot-bracket secondary structure
.(((((((((.((....((((((.((......)).))))))......)).)))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AAATCTCTGCAGGCAAATGTGATGTCACTAAAGAAATCACACACTTACCCGTAGAGATTCTG
dot-bracket secondary structure
.(((((((((.((....((((((.((......)).))))))......)).)))))))))...
SIMILARITIES| miRBase eca-mir-216b: 6e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-216: 6e-23 |
Identical with: eca-mir-1461 from miRBase (MNEST027306) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
