miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST026780
species: Canis familiaris
miRNA family: mir-219
source: miRBase, original name: cfa-mir-219-1 (MI0008007)







SEQUENCE & STRUCTURE
miRNA
TGATTGTCCAAACGCAATTCT

miRNA*
AGTTGAGTCTGGACGTCCCG

mismatches: 3
bulges: 1

View larger
pre-miRNA
TGATTGTCCAAACGCAATTCTCGAGTCTCTGGCTCTGGCCGAGAGTTGAGTCTGGACGTCCCG

dot-bracket secondary structure
.(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))...


SIMILARITIES
miRBase eca-mir-219: 9e-28

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-219: 9e-22

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"




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