ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-383
source: miRBase, original name: cfa-mir-383 (MI0008026)
SEQUENCE & STRUCTURE| miRNA AGATCAGAAGGTGATTGTGGCT miRNA* CCACAGCACTGCCTGGTCAGA mismatches: 3 bulges: 1 |
pre-miRNA
AAGATCAGAAGGTGATTGTGGCTTTGGGTGGATATTAATCAGCCACAGCACTGCCTGGTCAGA
dot-bracket secondary structure
).((((((..((((.((((((((...(((........)))))))))))))))..))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AAGATCAGAAGGTGATTGTGGCTTTGGGTGGATATTAATCAGCCACAGCACTGCCTGGTCAGA
dot-bracket secondary structure
).((((((..((((.((((((((...(((........)))))))))))))))..))))))...
SIMILARITIES| miRBase eca-mir-383: 1.0E-29 PMRD no hits microPC no hits | UniProt no hits RFAM 3mir-383: 9.0E-19 |
Identical with: ppy-mir-383 from miRBase (MNEST030990), hsa-mir-383 from miRBase , mml-mir-383 from miRBase , ptr-mir-383 from miRBase , eca-mir-383 from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
