ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-154
source: miRBase, original name: cfa-mir-487a (MI0010401)
SEQUENCE & STRUCTURE| miRNA AATCATACAGGGACATCCAGT miRNA* TGGTTATCCCTGCTGTGTTCG mismatches: 4 bulges: 2 |
pre-miRNA
GGTACTTGAAGAGTGGTTATCCCTGCTGTGTTCGCTGTATTTATGACGAATCATACAGGGACATCCAGTTTTTCAGTATC
dot-bracket secondary structure
((((((.(((((.(((...((((((.((((((((..((....))..)))).))))))))))...))).))))).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
GGTACTTGAAGAGTGGTTATCCCTGCTGTGTTCGCTGTATTTATGACGAATCATACAGGGACATCCAGTTTTTCAGTATC
dot-bracket secondary structure
((((((.(((((.(((...((((((.((((((((..((....))..)))).))))))))))...))).))))).))))))
SIMILARITIES| miRBase eca-mir-487a: 4e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 2e-36 |
Identical with: eca-mir-487a from miRBase (MNEST027192) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Artzi S, Kiezun A, Shomron N, BMC Bioinformatics. 9:39(2008)., "miRNAminer: a tool for homologous microRNA gene search"
