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ABOUT THIS RECORD
ID:
MNEST026857
species:
Canis familiaris
miRNA family:
mir-154
source:
miRBase, original name:
cfa-mir-487b
(
MI0008144
)
SEQUENCE & STRUCTURE
miRNA
AATCGTACAGGGTCATCCACTT
miRNA*
GTGGTTATCCCTGTCCTGTTCG
mismatches:
8
bulges:
0
View larger
pre-miRNA
GTGGTTATCCCTGTCCTGTTCG
TTTTACTCATGTCG
AATCGTACAGGGTCATCCACTT
dot-bracket secondary structure
((((....((((((.(.(((((
............))
))).).))))))....))))..
SIMILARITIES
miRBase
bta-mir-487b
:
3e-27
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-154: 6e-26
Identical with:
ssc-mir-487b
from miRBase (
MNEST034107
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N,
Nat Biotechnol. 26:407-415(2008).
,
"Discovering microRNAs from deep sequencing data using miRDeep"