ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-500
source: miRBase, original name: cfa-mir-500 (MI0008185)
SEQUENCE & STRUCTURE| miRNA ATGCACCTGGGCAAGGATTCT miRNA* AATCCTTGCTACCTGGGTGAGAGT mismatches: 7 bulges: 3 |
pre-miRNA
AATCCTTGCTACCTGGGTGAGAGTGCTTTCTGAATGCAATGCACCTGGGCAAGGATTCT
dot-bracket secondary structure
(((((((((...(..((((....(((.........)))...))))..))))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AATCCTTGCTACCTGGGTGAGAGTGCTTTCTGAATGCAATGCACCTGGGCAAGGATTCT
dot-bracket secondary structure
(((((((((...(..((((....(((.........)))...))))..))))))))))..
SIMILARITIES| miRBase bta-mir-500: 8e-28 PMRD no hits microPC no hits | UniProt no hits RFAM mir-500: 4e-24 |
Identical with: bta-mir-500 from miRBase (MNEST033404) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
