ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-500
source: miRBase, original name: cfa-mir-502 (MI0008187)
SEQUENCE & STRUCTURE| miRNA AATGCACCTGGGCAAGGATTCA miRNA* AATCCTTGCTATCTGGGTGCTAGTGC mismatches: 6 bulges: 4 |
pre-miRNA
AATCCTTGCTATCTGGGTGCTAGTGCTGTCTCAATGCAATGCACCTGGGCAAGGATTCA
dot-bracket secondary structure
(((((((((...(..(((((...(((.........)))..)))))..))))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
AATCCTTGCTATCTGGGTGCTAGTGCTGTCTCAATGCAATGCACCTGGGCAAGGATTCA
dot-bracket secondary structure
(((((((((...(..(((((...(((.........)))..)))))..))))))))))..
SIMILARITIES| miRBase eca-mir-502: 8e-28 PMRD no hits microPC no hits | UniProt no hits RFAM mir-500: 4e-24 |
Identical with: mml-mir-502 from miRBase (MNEST027943) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
