ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-1307
source: miRBase, original name: cfa-mir-1307 (MI0008071)
SEQUENCE & STRUCTURE| miRNA ACTCGGCGTGGCGTCGGTCGTG miRNA* CGACCGGACCTCGACCGGCTCG mismatches: 6 bulges: 2 |
pre-miRNA
CGACCGGACCTCGACCGGCTCGTCTATGTTGCCAATCGACTCGGCGTGGCGTCGGTCGTG
dot-bracket secondary structure
(((((((.((.((.(((..(((..............)))..))))).))..)))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
CGACCGGACCTCGACCGGCTCGTCTATGTTGCCAATCGACTCGGCGTGGCGTCGGTCGTG
dot-bracket secondary structure
(((((((.((.((.(((..(((..............)))..))))).))..)))))))..
SIMILARITIES| miRBase ssc-mir-1307: 2e-28 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1307: 9e-25 |
Identical with: ssc-mir-1307 from miRBase (MNEST034147) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
