ABOUT THIS RECORDspecies: Canis familiaris
miRNA family: mir-1837
source: miRBase, original name: cfa-mir-1837-4 (MI0015963)
SEQUENCE & STRUCTURE| miRNA TCTCAGAGGGACTGCGACATCT miRNA* ATGTGATGGCTCTTCTGAGAAG mismatches: 6 bulges: 0 |
pre-miRNA
ATGTGATGGCTCTTCTGAGAAGTACTTCGATGGCTCCTCTCAGAGGGACTGCGACATCT
dot-bracket secondary structure
((((..(((..(((((((((.(..((.....))..).)))))))))..)))..))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
ATGTGATGGCTCTTCTGAGAAGTACTTCGATGGCTCCTCTCAGAGGGACTGCGACATCT
dot-bracket secondary structure
((((..(((..(((((((((.(..((.....))..).)))))))))..)))..))))..
SIMILARITIES| miRBase cfa-mir-1837-1: 8e-28 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: cfa-mir-1837-3 from miRBase (MNEST026920) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N, Nat Biotechnol. 26:407-415(2008)., "Discovering microRNAs from deep sequencing data using miRDeep"
