ABOUT THIS RECORDspecies: Equus caballus
miRNA family: let-7
source: miRBase, original name: eca-let-7a (MI0012731)
Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTGTATAGTT miRNA* CTGTACAGCCTCCTAGCTTTCC mismatches: 3 bulges: 0 |
pre-miRNA
AGGTTGAGGTAGTAGGTTGTATAGTTTAGAATTACATCAAGGGAGATAACTGTACAGCCTCCTAGCTTTCCT
dot-bracket secondary structure
(((..(((.(((.(((((((((((((.....(..(.....)..)...))))))))))))).))).))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
AGGTTGAGGTAGTAGGTTGTATAGTTTAGAATTACATCAAGGGAGATAACTGTACAGCCTCCTAGCTTTCCT
dot-bracket secondary structure
(((..(((.(((.(((((((((((((.....(..(.....)..)...))))))))))))).))).))).)))
SIMILARITIES| miRBase cfa-let-7a-2: 2e-35 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 3e-34 |
Identical with: ppy-let-7a-2 from miRBase (MNEST030732) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
