ABOUT THIS RECORDspecies: Equus caballus
miRNA family: mir-29
source: miRBase, original name: eca-mir-29b-2 (MI0012715)
Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAAATCAGTGTT miRNA* GCTGGTTTCACATGGTGGCTTAGA mismatches: 1 bulges: 3 |
pre-miRNA
GCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAG
dot-bracket secondary structure
)(((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
GCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAG
dot-bracket secondary structure
)(((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).)))))))))
SIMILARITIES| miRBase sla-mir-29b: 9.0E-41 PMRD no hits microPC no hits | UniProt no hits RFAM 9mir-29: 6.0E-27 |
Identical with: mml-mir-29b-2 from miRBase (MNEST027678), hsa-mir-29b-2 from miRBase , mne-mir-29b from miRBase , ppy-mir-29b-2 from miRBase , ptr-mir-29b-2 from miRBase , sla-mir-29b from miRBase , ppa-mir-29b-2 from miRBase , cfa-mir-29b-2 from miRBase , ggo-mir-29b-2 from miRBase , bta-mir-29b-2 from miRBase , rno-mir-29b-2 from miRBase , mmu-mir-29b-2 from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
