ABOUT THIS RECORDspecies: Equus caballus
miRNA family: mir-129
source: miRBase, original name: eca-mir-129a (MI0012687)
Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTTTGCGGTCTGGGCTTGC miRNA* AAGCCCTTACCCCAAAAAGTA mismatches: 4 bulges: 0 |
pre-miRNA
TGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTCAACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCT
dot-bracket secondary structure
.(((((((((((.(((..((((((.(((..(..((....))..).))).))))))..))).))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
TGGATCTTTTTGCGGTCTGGGCTTGCTGTTCCTCTCAACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCT
dot-bracket secondary structure
.(((((((((((.(((..((((((.(((..(..((....))..).))).))))))..))).))))))).))))
SIMILARITIES| miRBase eca-mir-129a: 5e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-129: 8e-35 |
Identical with: cfa-mir-129-1 from miRBase (MNEST026696) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
