ABOUT THIS RECORDspecies: Equus caballus
miRNA family: mir-148
source: miRBase, original name: eca-mir-148b (MI0012724)
Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAAGTTCTGTTATACACTCAGG miRNA* AGTGCATCACAGAACTTTGT mismatches: 3 bulges: 2 |
pre-miRNA
AGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCT
dot-bracket secondary structure
(((.(((((((..(((((((((.((.((((..((((....(.....)..)))))))).)).)))))))))..))))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
AGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCT
dot-bracket secondary structure
(((.(((((((..(((((((((.((.((((..((((....(.....)..)))))))).)).)))))))))..))))))).)))
SIMILARITIES| miRBase eca-mir-148b: 6e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-148: 3e-38 |
Identical with: ssc-mir-148b from miRBase (MNEST033999) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
