miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST027051
species: Equus caballus
miRNA family: mir-148
source: miRBase, original name: eca-mir-148b (MI0012724)

Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAAGTTCTGTTATACACTCAGG

miRNA*
AGTGCATCACAGAACTTTGT

mismatches: 3
bulges: 2

View larger
pre-miRNA
AGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCT

dot-bracket secondary structure
(((.(((((((..(((((((((.((.((((..((((....(.....)..)))))))).)).)))))))))..))))))).)))


SIMILARITIES
miRBase eca-mir-148b: 6e-42

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-148: 3e-38

Identical with: ssc-mir-148b from miRBase (MNEST033999)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"




Liczniki na strone;