ABOUT THIS RECORDspecies: Equus caballus
miRNA family: mir-149
source: miRBase, original name: eca-mir-149 (MI0012725)
Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTGGCTCCGTGTCTTCACTCCC miRNA* GAGGGAGGGACGGGGGCTGTGC mismatches: 4 bulges: 1 |
pre-miRNA
GCCGGCGCCCAGGCTCTGGCTCCGTGTCTTCACTCCCGTGTGTGTCCGAGGAGGGAGGGAGGGACGGGGGCTGTGCTGGGGCTGCCGGA
dot-bracket secondary structure
.(((((((((.(((.(.(.((((((.(((((.(((((...((....))....)))))))))).)))))).).).))).)))).))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
GCCGGCGCCCAGGCTCTGGCTCCGTGTCTTCACTCCCGTGTGTGTCCGAGGAGGGAGGGAGGGACGGGGGCTGTGCTGGGGCTGCCGGA
dot-bracket secondary structure
.(((((((((.(((.(.(.((((((.(((((.(((((...((....))....)))))))))).)))))).).).))).)))).))))).
SIMILARITIES| miRBase mml-mir-149: 2e-38 PMRD no hits microPC no hits | UniProt no hits RFAM mir-149: 4e-37 |
Identical with: ssc-mir-149 from miRBase (MNEST034000) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
