ABOUT THIS RECORDspecies: Equus caballus
miRNA family: mir-196
source: miRBase, original name: eca-mir-196a (MI0012775)
Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGTAGTTTCATGTTGTTGGG miRNA* ACAACGACATTAAACCACCCGAC mismatches: 5 bulges: 1 |
pre-miRNA
GTGAGTTAGGTAGTTTCATGTTGTTGGGCCTGGATTTCTGAACACAACGACATTAAACCACCCGACTCAC
dot-bracket secondary structure
((((((..(((.((((.((((((((((..(.((....)))..).))))))))).)))).)))..))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
GTGAGTTAGGTAGTTTCATGTTGTTGGGCCTGGATTTCTGAACACAACGACATTAAACCACCCGACTCAC
dot-bracket secondary structure
((((((..(((.((((.((((((((((..(.((....)))..).))))))))).)))).)))..))))))
SIMILARITIES| miRBase bta-mir-196a-1: 7e-32 PMRD no hits microPC no hits | UniProt no hits RFAM mir-196: 2e-23 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
