ABOUT THIS RECORDspecies: Equus caballus
miRNA family: mir-431
source: miRBase, original name: eca-mir-431 (MI0012900)
Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCTTGCAGGCCGTCATGCAGG miRNA* ACGTTGCAGGTCGTCTTGCAGGGCTTC mismatches: 4 bulges: 4 |
pre-miRNA
CGTCCTGCGAGGTGTCTTGCAGGCCGTCATGCAGGCCACACTGACGGTAACGTTGCAGGTCGTCTTGCAGGGCTTCTCGCAAGACGACA
dot-bracket secondary structure
((((.(((((((.((((((((((.((.(.((((((((........)))....))))).).)).)))))))))).))))))).))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
CGTCCTGCGAGGTGTCTTGCAGGCCGTCATGCAGGCCACACTGACGGTAACGTTGCAGGTCGTCTTGCAGGGCTTCTCGCAAGACGACA
dot-bracket secondary structure
((((.(((((((.((((((((((.((.(.((((((((........)))....))))).).)).)))))))))).))))))).))))...
SIMILARITIES| miRBase mmu-mir-431: 2e-45 PMRD no hits microPC no hits | UniProt sp|Q7M732|RTL1_MOUSE: 0.0000000005 RFAM mir-431: 2e-39 |
Identical with: rno-mir-431 from miRBase (MNEST032911) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
