ABOUT THIS RECORDspecies: Equus caballus
miRNA family: mir-492
source: miRBase, original name: eca-mir-492-1 (MI0012676)
Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGAGCTGCGGGACAAGATTCTT miRNA* GATTGTTCTGCAGATCGAC mismatches: 3 bulges: 3 |
pre-miRNA
GAGGAGCTGCGGGACAAGATTCTTGGGGCCACCATTGAGAACTCCAAGATTGTTCTGCAGATCGAC
dot-bracket secondary structure
...((.(((((((((((...((((((((.............))))))))))))))))))).))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
GAGGAGCTGCGGGACAAGATTCTTGGGGCCACCATTGAGAACTCCAAGATTGTTCTGCAGATCGAC
dot-bracket secondary structure
...((.(((((((((((...((((((((.............))))))))))))))))))).))...
SIMILARITIES| miRBase eca-mir-492-2: 2e-29 PMRD no hits microPC no hits | UniProt sp|Q63279|K1C19_RAT: 0.0004 RFAM mir-492: 4e-21 |
Identical with: eca-mir-492-2 from miRBase (MNEST027201) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
