ABOUT THIS RECORDspecies: Equus caballus
miRNA family: mir-1842
source: miRBase, original name: eca-mir-1842 (MI0012799)
Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCTCTGTGAGGTCGGCTCA miRNA* AGCAGGCCTGTCAGGGCGTTG mismatches: 5 bulges: 0 |
pre-miRNA
TGGCTCTGTGAGGTCGGCTCAAGGTGGGTCTGGATATTGAGCAGGCCTGTCAGGGCGTTG
dot-bracket secondary structure
..((((((..(((((.((((((.((........)).)))))).)))))..))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
TGGCTCTGTGAGGTCGGCTCAAGGTGGGTCTGGATATTGAGCAGGCCTGTCAGGGCGTTG
dot-bracket secondary structure
..((((((..(((((.((((((.((........)).)))))).)))))..))))))....
SIMILARITIES| miRBase cfa-mir-1842: 1e-23 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y, Genomics. 94:125-131(2009)., "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach"
