ABOUT THIS RECORDspecies: Monodelphis domestica
miRNA family: mir-1
source: miRBase, original name: mdo-mir-1 (MI0005269)
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTATGTA miRNA* CATACTTCTTTATGTACCCATA mismatches: 1 bulges: 1 |
pre-miRNA
ACCTACTCAGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGTAGGTG
dot-bracket secondary structure
(((((((.(((((((((((((((((((((..(((((..............))))).))))))))))))))))))))).))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Devor EJ, Samollow PB, J Hered. 99:66-72(2008)., "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica"
ACCTACTCAGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGTAGGTG
dot-bracket secondary structure
(((((((.(((((((((((((((((((((..(((((..............))))).))))))))))))))))))))).))))))).
SIMILARITIES| miRBase hsa-mir-1-2: 2e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 3e-32 |
Identical with: ptr-mir-1-2 from miRBase (MNEST030138) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Devor EJ, Samollow PB, J Hered. 99:66-72(2008)., "In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica"
