ABOUT THIS RECORDspecies: Macaca mulatta
miRNA family: mir-19
source: miRBase, original name: mml-mir-19a (MI0003003)
Taxonomy by NCBI:
Macaca mulatta Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGCAAATCTATGCAAAACTGA miRNA* AGTTTTGCATAGTTGCACTAC mismatches: 1 bulges: 2 |
pre-miRNA
GCAGTCCTCTGTTAGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGC
dot-bracket secondary structure
((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
GCAGTCCTCTGTTAGTTTTGCATAGTTGCACTACAAGAAGAATGTAGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGC
dot-bracket secondary structure
((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))
SIMILARITIES| miRBase sla-mir-19a: 2e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-19: 4e-31 |
Identical with: ssc-mir-19a from miRBase (MNEST033919) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
