ABOUT THIS RECORDspecies: Macaca mulatta
miRNA family: mir-188
source: miRBase, original name: mml-mir-188 (MI0002608)
Taxonomy by NCBI:
Macaca mulatta Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCCCTTGCATGGTGGAGGGT miRNA* CCTCCCACATGCAGGGTTTGCA mismatches: 5 bulges: 0 |
pre-miRNA
TGCTCCCTCTCTCACATCCCTTGCATGGTGGAGGGTGAGCTTTATGAAAACCCCTCCCACATGCAGGGTTTGCAGGATGGTGAGCC
dot-bracket secondary structure
.((((((..(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..))).)).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
TGCTCCCTCTCTCACATCCCTTGCATGGTGGAGGGTGAGCTTTATGAAAACCCCTCCCACATGCAGGGTTTGCAGGATGGTGAGCC
dot-bracket secondary structure
.((((((..(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..))).)).)))).
SIMILARITIES| miRBase mne-mir-188: 1e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-188: 2e-39 |
Identical with: mne-mir-188 from miRBase (MNEST028227) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
