ABOUT THIS RECORDspecies: Macaca mulatta
miRNA family: mir-196
source: miRBase, original name: mml-mir-196a-1 (MI0002821)
Taxonomy by NCBI:
Macaca mulatta Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGTAGTTTCATGTTGTTGG miRNA* CAACAACATTAAACCACCCGAT mismatches: 4 bulges: 1 |
pre-miRNA
GTGAATTAGGTAGTTTCATGTTGTTGGGCCTGGGTTTCTGAACACAACAACATTAAACCACCCGATTCAC
dot-bracket secondary structure
((((((..(((.((((.((((((((((..(.........)..).))))))))).)))).)))..))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
GTGAATTAGGTAGTTTCATGTTGTTGGGCCTGGGTTTCTGAACACAACAACATTAAACCACCCGATTCAC
dot-bracket secondary structure
((((((..(((.((((.((((((((((..(.........)..).))))))))).)))).)))..))))))
SIMILARITIES| miRBase ggo-mir-196-1: 3e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-196: 3e-28 |
Identical with: ptr-mir-196a-1 from miRBase (MNEST030271) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
