ABOUT THIS RECORDspecies: Macaca mulatta
miRNA family: mir-8
source: miRBase, original name: mml-mir-200c (MI0002484)
Taxonomy by NCBI:
Macaca mulatta Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATACTGCCGGGTAATGATGGA miRNA* CGTCTTACCCAGCAGTGTTTG mismatches: 3 bulges: 1 |
pre-miRNA
CCCTCGTCTTACCCAGCAGTGTTTGGGTGCGGTTGGGAGTCTCTAATACTGCCGGGTAATGATGGAGG
dot-bracket secondary structure
((..((((((((((.((((((((.(((.((........))))).)))))))).)))))).))))..))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
CCCTCGTCTTACCCAGCAGTGTTTGGGTGCGGTTGGGAGTCTCTAATACTGCCGGGTAATGATGGAGG
dot-bracket secondary structure
((..((((((((((.((((((((.(((.((........))))).)))))))).)))))).))))..))
SIMILARITIES| miRBase hsa-mir-200c: 4e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-8: 3e-31 |
Identical with: ppy-mir-200c from miRBase (MNEST030898) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
