ABOUT THIS RECORDspecies: Macaca mulatta
miRNA family: mir-548
source: miRBase, original name: mml-mir-548a (MI0007819)
Taxonomy by NCBI:
Macaca mulatta Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAATACTGGCAATTACTTTTCC miRNA* AAAAGTAATTGTGGTTTTTTGCC mismatches: 2 bulges: 3 |
pre-miRNA
TCCAGGGAGGTATTAAGTTGGTGCAAAAGTAATTGTGGTTTTTTGCCATTAAAAGTAATGACAATACTGGCAATTACTTTTCCTCCAAACCTGATATT
dot-bracket secondary structure
..((((...........((((.(.(((((((((((((((...(((.(((((....))))).))).))).)))))))))))).).)))).)))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yue J, Sheng Y, Orwig KE, BMC Genomics. 9:8(2008)., "Identification of novel homologous microRNA genes in the rhesus macaque genome"
TCCAGGGAGGTATTAAGTTGGTGCAAAAGTAATTGTGGTTTTTTGCCATTAAAAGTAATGACAATACTGGCAATTACTTTTCCTCCAAACCTGATATT
dot-bracket secondary structure
..((((...........((((.(.(((((((((((((((...(((.(((((....))))).))).))).)))))))))))).).)))).)))).....
SIMILARITIES| miRBase ptr-mir-548a-1: 3e-35 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 0.000000000006 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yue J, Sheng Y, Orwig KE, BMC Genomics. 9:8(2008)., "Identification of novel homologous microRNA genes in the rhesus macaque genome"
