ABOUT THIS RECORDspecies: Macaca nemestrina
miRNA family: mir-7
source: miRBase, original name: mne-mir-7-1 (MI0002779)
Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGACTAGTGATTTTGTT miRNA* CAAATCACAGTCTGCCATA mismatches: 1 bulges: 2 |
pre-miRNA
TTGGATGTTGGCCTAGTTCTGTGTGGAAGACTAGTGATTTTGTTGTTTTTAGATAACTAAATTGACAACAAATCACAGTCTGCCATATGGCACAGGCCAT
GCCTCTACAG
dot-bracket secondary structure
.((((.((((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).)))))))).
)).))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
TTGGATGTTGGCCTAGTTCTGTGTGGAAGACTAGTGATTTTGTTGTTTTTAGATAACTAAATTGACAACAAATCACAGTCTGCCATATGGCACAGGCCAT
GCCTCTACAG
dot-bracket secondary structure
.((((.((((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).)))))))).
)).))))...
SIMILARITIES| miRBase mml-mir-7-1: 6e-58 PMRD no hits microPC no hits | UniProt no hits RFAM mir-7: 1e-40 |
Identical with: mml-mir-7-1 from miRBase (MNEST027642) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
