ABOUT THIS RECORDspecies: Macaca nemestrina
miRNA family: mir-30
source: miRBase, original name: mne-mir-30b (MI0002506)
Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTAAACATCCTACACTCAGC miRNA* TGGGAGGTGGATGTTTACTTC mismatches: 2 bulges: 2 |
pre-miRNA
ACCAAGTTTCAGTTCATGTAAACATCCTACACTCAGCTGTAATACATGGATTGGCTGGGAGGTGGATGTTTACTTCAGCTGACTTGGA
dot-bracket secondary structure
.(((((..((((((...((((((((((.((.((((((((............))))))))..))))))))))))...))))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
ACCAAGTTTCAGTTCATGTAAACATCCTACACTCAGCTGTAATACATGGATTGGCTGGGAGGTGGATGTTTACTTCAGCTGACTTGGA
dot-bracket secondary structure
.(((((..((((((...((((((((((.((.((((((((............))))))))..))))))))))))...))))))))))).
SIMILARITIES| miRBase mml-mir-30b: 7e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-30: 1e-18 |
Identical with: ppy-mir-30b from miRBase (MNEST030783) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
