ABOUT THIS RECORDspecies: Macaca nemestrina
miRNA family: mir-134
source: miRBase, original name: mne-mir-134 (MI0002591)
Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGACTGGTTGACCAGAGGG miRNA* CTGTGGGCCACCTAGTCACCAA mismatches: 4 bulges: 1 |
pre-miRNA
CAGGGTGTGTGACTGGTTGACCAGAGGGGCATGCACTGTGTTCACCCTGTGGGCCACCTAGTCACCAACCCTC
dot-bracket secondary structure
.(((((..((((((((.((.(((.((((((((.....))))...)))).)))..)).))))))))..))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
CAGGGTGTGTGACTGGTTGACCAGAGGGGCATGCACTGTGTTCACCCTGTGGGCCACCTAGTCACCAACCCTC
dot-bracket secondary structure
.(((((..((((((((.((.(((.((((((((.....))))...)))).)))..)).))))))))..))))).
SIMILARITIES| miRBase hsa-mir-134: 5e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-134: 3e-25 |
Identical with: ptr-mir-134 from miRBase (MNEST030223) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
