ABOUT THIS RECORDspecies: Macaca nemestrina
miRNA family: mir-194
source: miRBase, original name: mne-mir-194 (MI0003032)
Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTAACAGCAACTCCATGTGGA miRNA* CAGTGGAGATGCTGTTACTTT mismatches: 2 bulges: 1 |
pre-miRNA
ATGGTGTTATCAAGTGTAACAGCAACTCCATGTGGACTGTGTACCAATTTCCAGTGGAGATGCTGTTACTTTTGATGGTTACCAA
dot-bracket secondary structure
.(((((..((((((.(((((((((.((((((.((((..((......)).)))))))))).))))))))).))))))..).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
ATGGTGTTATCAAGTGTAACAGCAACTCCATGTGGACTGTGTACCAATTTCCAGTGGAGATGCTGTTACTTTTGATGGTTACCAA
dot-bracket secondary structure
.(((((..((((((.(((((((((.((((((.((((..((......)).)))))))))).))))))))).))))))..).)))).
SIMILARITIES| miRBase age-mir-194: 4e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-194: 7e-42 |
Identical with: mml-mir-194-1 from miRBase (MNEST027787) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
