ABOUT THIS RECORDspecies: Homo sapiens
source: miRBase, original name: hsa-mir-378i (MI0016902)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTGGACTAGGAGTCAGAAGG miRNA* CTTGGGCCCTGGGCATGT mismatches: 4 bulges: 3 |
pre-miRNA
GGGAGCACTGGACTAGGAGTCAGAAGGTGGAGTTCTGGGTGCTGTTTTCCCACTCTTGGGCCCTGGGCATGTTCTG
dot-bracket secondary structure
.((((((.((..(((((.(((.((..((((((..(........)..)).))))..)).)))))))).)))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Yan Au W, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill , Blood. 116:e118-e127(2010)., "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs"
GGGAGCACTGGACTAGGAGTCAGAAGGTGGAGTTCTGGGTGCTGTTTTCCCACTCTTGGGCCCTGGGCATGTTCTG
dot-bracket secondary structure
.((((((.((..(((((.(((.((..((((((..(........)..)).))))..)).)))))))).)))))))).
SIMILARITIES| miRBase eca-mir-345: 0.00005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-345: 0.001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Yan Au W, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill , Blood. 116:e118-e127(2010)., "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs"
