ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-449
source: miRBase, original name: hsa-mir-449c (MI0003823)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGCAGTGTATTGCTAGCGGCTGT miRNA* AGTTGCTAGTTGCACTCCTCTC mismatches: 1 bulges: 3 |
pre-miRNA
GCTGGGATGTGTCAGGTAGGCAGTGTATTGCTAGCGGCTGTTAATGATTTTAACAGTTGCTAGTTGCACTCCTCTCTGTTGCATTCAGAAGC
dot-bracket secondary structure
(((.(((((((.(((..(((.((((((..(((((((((((((((.....))))))))))))))))))))))))..))).)))))))...)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RAKE, 454
references
[1] Wyman SK, Parkin RK, Mitchell PS, Fritz BR, O'Briant K, Godwin AK, Urban N, Drescher CW, Knudsen BS, Tewari M, PLoS One. 4:e5311(2009)., "Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries"
[2] Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E, Genome Res. 16:1289-1298(2006)., "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis"
GCTGGGATGTGTCAGGTAGGCAGTGTATTGCTAGCGGCTGTTAATGATTTTAACAGTTGCTAGTTGCACTCCTCTCTGTTGCATTCAGAAGC
dot-bracket secondary structure
(((.(((((((.(((..(((.((((((..(((((((((((((((.....))))))))))))))))))))))))..))).)))))))...)))
SIMILARITIES| miRBase bta-mir-449c: 0.00000000000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-449: 1e-40 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RAKE, 454
references
[1] Wyman SK, Parkin RK, Mitchell PS, Fritz BR, O'Briant K, Godwin AK, Urban N, Drescher CW, Knudsen BS, Tewari M, PLoS One. 4:e5311(2009)., "Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries"
[2] Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E, Genome Res. 16:1289-1298(2006)., "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis"
