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ABOUT THIS RECORD

ID: MNEST028799
species: Homo sapiens
miRNA family: mir-548
source: miRBase, original name: hsa-mir-548aa-1 (MI0016689)

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAAAACCACAATTACTTTTGCACCA

miRNA*
GTGCAAAAGAAACTGTGGTTTTTGC

mismatches: 2
bulges: 0

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pre-miRNA
CTTTATTAGTCTGGTGCAAAAGAAACTGTGGTTTTTGCCATTACTTTTACAGGCAAAAACCACAATTACTTTTGCACCAACCTAATATAACTTGTTT

dot-bracket secondary structure
...((((((..(((((((((((.((.(((((((((((((............))))))))))))).)).)))))))))))..))))))..........


SIMILARITIES
miRBase hsa-mir-548d-1: 3e-50

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-548: 1e-31

Identical with: hsa-mir-548d-1 from miRBase (MNEST028821)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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evidence: Solexa

references

[1] Witten D, Tibshirani R, Gu SG, Fire A, Lui WO, BMC Biol. 8:58(2010)., "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls"




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