ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-548
source: miRBase, original name: hsa-mir-548f-2 (MI0006375)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAAACTGTAATTACTTTT miRNA* ACATAATTGCAGTTTTTAT mismatches: 2 bulges: 0 |
pre-miRNA
TAATAACTATTAGGTTGGTGCGAACATAATTGCAGTTTTTATCATTACTTTTAATGGCAAAAACTGTAATTACTTTTGCACCAACCTAATATTTTAGT
dot-bracket secondary structure
.......(((((((((((((((((..((((((((((((((..(((((....)))))..))))))))))))))..))))))))))))))))).......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"
TAATAACTATTAGGTTGGTGCGAACATAATTGCAGTTTTTATCATTACTTTTAATGGCAAAAACTGTAATTACTTTTGCACCAACCTAATATTTTAGT
dot-bracket secondary structure
.......(((((((((((((((((..((((((((((((((..(((((....)))))..))))))))))))))..))))))))))))))))).......
SIMILARITIES| miRBase hsa-mir-548aj-2: 9e-23 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 2e-18 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"
