ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-548
source: miRBase, original name: hsa-mir-548f-5 (MI0006378)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAAACTGTAATTACTTTT miRNA* AAGTAATCATGTTTTTTTC mismatches: 3 bulges: 0 |
pre-miRNA
TATTAGGTTGCTGCAAAAGTAATCATGTTTTTTTCCATTGTAAGTAATGGGAAAAACTGTAATTACTTTTGTACCAACCTAATAGC
dot-bracket secondary structure
((((((((((.((((((((((((.((..((((((((((((....))))))))))))..)).)))))))))))).))))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"
TATTAGGTTGCTGCAAAAGTAATCATGTTTTTTTCCATTGTAAGTAATGGGAAAAACTGTAATTACTTTTGTACCAACCTAATAGC
dot-bracket secondary structure
((((((((((.((((((((((((.((..((((((((((((....))))))))))))..)).)))))))))))).))))))))))..
SIMILARITIES| miRBase hsa-mir-548f-2: 0.00000000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 0.0000000003 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"
