ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-548
source: miRBase, original name: hsa-mir-548h-1 (MI0006411)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAAGTAATCGCGGTTTTTGTC miRNA* TAAAAACTGGAATTACTTTTGC mismatches: 4 bulges: 0 |
pre-miRNA
ATCTGTCCATTAGGTGGGTGCAAAAGTAATCGCGGTTTTTGTCATTACTTTTAATGGTAAAAACTGGAATTACTTTTGCACTGACCTAATATTAAGCCAGA
TA
dot-bracket secondary structure
)((((.(.(((((((.((((((((((((((..((((((((..(((((....)))))..))))))))..)))))))))))))).))))))).....).))))
..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"
ATCTGTCCATTAGGTGGGTGCAAAAGTAATCGCGGTTTTTGTCATTACTTTTAATGGTAAAAACTGGAATTACTTTTGCACTGACCTAATATTAAGCCAGA
TA
dot-bracket secondary structure
)((((.(.(((((((.((((((((((((((..((((((((..(((((....)))))..))))))))..)))))))))))))).))))))).....).))))
..
SIMILARITIES| miRBase ptr-mir-548h: 9.0E-51 PMRD no hits microPC no hits | UniProt no hits RFAM 8mir-548: 3.0E-20 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"
