ABOUT THIS RECORD

ID: MNEST028832
species: Homo sapiens
miRNA family: mir-548
source: miRBase, original name: hsa-mir-548h-2 (MI0006412)

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE

pre-miRNA
GTATTAGGTTGGTGCAAAAGTAATCGCGGTTTTTGTCATTACTTTCAATGGCAAACACCACAATTACTTTTGCACCAACCTAATATAA

dot-bracket secondary structure
((((((((((((((((((((((((.(.(((.(((((((((......))))))))).))).).))))))))))))))))))))))))..


SIMILARITIES

miRBase hsa-mir-548aa-2: 5e-27 PMRD no hits microPC no hits

UniProt no hits RFAM mir-548: 4e-28

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references
[1] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"