ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-548
source: miRBase, original name: hsa-mir-548h-5 (MI0016751)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAAGTAATCGCGGTTTTTGTC miRNA* AAAAACCACGGTTGCTTTTGC mismatches: 2 bulges: 0 |
pre-miRNA
ACAAAAGTAATCGCGGTTTTTGTCATTACTTTTAACTGTAAAAACCACGGTTGCTTTTGC
dot-bracket secondary structure
.((((((((((((.((((((((.(((((....))).)))))))))).)))))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Yan Au W, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill , Blood. 116:e118-e127(2010)., "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs"
ACAAAAGTAATCGCGGTTTTTGTCATTACTTTTAACTGTAAAAACCACGGTTGCTTTTGC
dot-bracket secondary structure
.((((((((((((.((((((((.(((((....))).)))))))))).)))))))))))).
SIMILARITIES| miRBase hsa-mir-548h-1: 0.00000000000004 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 0.0000000002 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Yan Au W, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill , Blood. 116:e118-e127(2010)., "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs"
